Section: Partnerships and Cooperations

National Initiatives

ANR

• Ancestrome (2012-2017): phylogenetic reconstruction of ancestral "-omes", a five-year project, call "Bioinformatics" of the "Investissements d'avenir". Supervisor: V Daubin (CNRS, LBBE, Lyon) ; with Institut Pasteur, ENS Paris, ISEM (Univ Montpellier 2) Participant: E Tannier.

• Aucomsi (2013-2016) (Models of the vocal tract to study auditory circuits): a 4-year project funded by a grant from the ANR-NSF-NIH Call for French-US Projects in Computational Neuroscience. With F. Theunissen, UC Berkeley, CA, USA. Supervisor: H. Soula (for France) and F. Theunissen (for US). Participants: H. Soula, M. Fernandez.

• Dopaciumcity (2014-2017): Dopamine modulation of calcium influx underlying synaptic plasticity, a 4-year project funded by a grant from the ANR-NSF-NIH Call for French-US Projects in Computational Neuroscience. With L. Venance, College de France, CIRB, CNRS/UMR 7241 - INSERM U1050, Paris, France and K Blackwell, Krasnow Institute of Advanced Studies, George Mason University, Fairfax, VA, USA. Supervisor: L Venance (for France) and K.L. Blackwell (for US). Participants: H Berry, I Prokin, A Foncelle

• Dallish (2016-2020): Data Assimilation and Lattice LIght SHeet imaging for endocytosis/exocytosis pathway modeling in the whole cell, Call AAPG ANR 2016. With C. Kervrann (Inria Rennes), J. Salamero (Institute Curie, Paris), B. Laroche (INRA, Jouy-en-Josas). Participants: H. Berry.

Inria

• ADT Phylophile. Participants: E Tannier, in collaboration with D Parsons, Inria, V Daubin, B Boussau, CNRS, Université de Lyon 1. This project aims at producing an easy to use software integrating modern algorithmic methods to build gene trees. It has been funded by Inria by a 24 month software engineer.

• ADT Aevol. Participants: C Kinbbe, G Beslon, V Liard, J Rouzaud-Cornabas, D Parsons. This project aims at speeding and scaling and maintaining the code for our most complex software, aevol. It has been funded by Inria by a 24 month software engineer.